
    tjY                         d dl Z d dlZd dlmZ d dlmZ d dlmZ  ed            e e j        d                    Z	d	Z
d
ZdedefdZdedefdZdedefdZdS )    N)Path)OpenAI)load_dotenvT)overrideOPENAI_API_KEY)api_keyuS  You are a pharma data validation engine.

Validate parameters[] against sop_limits[] specs.
Also validate lims_results[] — any Fail = DEVIATION.

Return JSON only:
{
  "batch_id": string or null,
  "product_name": string or null,
  "validation_rows": [
    {
      "source_id": "REF-XXXXX",
      "parameter_name": string,
      "target_value": string or null,
      "found_value": string or null,
      "validation_status": one of ["Valid", "Missing Value", "Unmapped Parameter", "Needs Review", "DEVIATION"],
      "confidence": number 0-100,
      "source_file": string,
      "issue_reason": string or null,
      "tab": one of ["parameters", "specifications"]
    }
  ],
  "compliance_score": number 0-100,
  "compliance_label": string,
  "alcoa_checklist": {
    "attributable": one of ["pass","warn","fail"],
    "legible": one of ["pass","warn","fail"],
    "contemporaneous": one of ["pass","warn","fail"],
    "original": one of ["pass","warn","fail"],
    "accurate": one of ["pass","warn","fail"],
    "complete": one of ["pass","warn","fail"],
    "consistent": one of ["pass","warn","fail"],
    "enduring": one of ["pass","warn","fail"],
    "available": one of ["pass","warn","fail"]
  },
  "missing_data_alerts": [
    {"type": string, "message": string, "severity": one of ["critical","warning","info"]}
  ],
  "ai_mapping_insights": {
    "auto_corrected": [{"description": string, "detail": string}],
    "suggestions": [{"description": string, "detail": string}],
    "warnings": [{"description": string, "detail": string}]
  },
  "summary": {
    "valid_count": number,
    "missing_count": number,
    "unmapped_count": number,
    "needs_review_count": number,
    "low_confidence_count": number
  }
}

Rules:
- parameters[] rows → tab: "parameters"
- sop_limits[] rows → tab: "specifications" — compare each spec lower/upper limit
- lims_results[] Fail rows → tab: "parameters" with status DEVIATION
- DEVIATION: value outside lower/upper limit
- Missing Value: found_value is null
- compliance_label: "Pass" if 90+, "Minor Deviations Found" if 70-89, "Critical Issues" if below 70

Data:
<data>
u  You are a pharma data validation engine.

Validate equipment_readings[] and extract operator information.

Return JSON only:
{
  "equipment_rows": [
    {
      "source_id": "EQ-XXXXX",
      "parameter_name": string,
      "target_value": string or null,
      "found_value": string or null,
      "validation_status": one of ["Valid", "Needs Review", "DEVIATION"],
      "confidence": number 0-100,
      "source_file": string,
      "issue_reason": string or null,
      "tab": "equipment"
    }
  ],
  "operator_rows": [
    {
      "source_id": "OP-XXXXX",
      "parameter_name": string,
      "target_value": string or null,
      "found_value": string or null,
      "validation_status": one of ["Valid", "Missing Value"],
      "confidence": number 0-100,
      "source_file": string,
      "issue_reason": string or null,
      "tab": "operators"
    }
  ],
  "source_document_rows": [
    {
      "source_id": "SRC-XXXXX",
      "parameter_name": string,
      "target_value": string or null,
      "found_value": string or null,
      "validation_status": "Valid",
      "confidence": number 0-100,
      "source_file": string,
      "issue_reason": null,
      "tab": "source_documents"
    }
  ]
}

Rules:
- equipment_rows: one row per equipment_reading — Alert status = DEVIATION
- operator_rows: one row per unique operator_id found — if operator_id null = Missing Value
- source_document_rows: one row per unique source file
- Fill operator_id from equipment_readings[].operator_id column

Data:
<data>
all_rowsreturnc                 \   g }| D ]%}|                     dd          }|dk    rdt          |                     dd                    v s%dt          |                     dd                    v rdnd	}|                    |                     d
d          |                     dd          |                     d          p|                     d           d|d           |dk    rD|                    d|                     dd          |                     d           dd	d           '|S )Nvalidation_status Needs ReviewOOSissue_reasonCalibrationparameter_namecriticalwarningtabunknown	source_idz needs review)typer   messageseverityMissing Valuemissing_valueu#    — value not found in source file)getstrappend)r	   alertsrowstatussevs        EC:\Users\Terasoftware\OneDrive\Desktop\faahhh\fyndo\fyndo\validate.py_build_alertsr%      sx   F  ,b11^# 	 %SWW^R-H-H)I)I I  P]^abebibijz|~bb  _A  _A  NA  P**  GPCMMy11 WW["5577>22aAQ9R9R6a6a6a	      & 	MM' WW["55!gg&677\\\%	     M    c                 l   g }g }| D ]}|                     d          dk    r[|                    d|                     d           d|                     d           d|                     dd	           d
           |                     d          dk    rdt          |                     dd	                    v r[|                    d|                     d           d|                     d           d|                     d           dd
           |                     d          dk    r,|                    d|                     dd          d
           dt          |                     dd	                    v r,|                    d|                     dd          d
           g ||dS )Nr   	DEVIATIONzDEVIATION: r   zFound value found_valuez is outside specified limits. r   r   )descriptiondetailr   r   zOOS Result: zResult z outside spec target_valuez. OOS investigation required.r   	operatorszOperator ID missing from BMRz.Operator found in Equipment Log but not in BMRr   zEquipment calibration overdueu3   Calibration overdue — equipment may be inaccurateauto_correctedsuggestionswarnings)r   r   r   )r	   r1   r0   r!   s       r$   _build_insightsr2      s   HK  77&'';6 	OOHSWW5E-F-FHH|)?)?||_b_f_fguwy_z_z||     77&''>9 	CGGNB77888 #M#'':J2K2K#M#M E(>(>  E  EcggVdNeNe  E  E  E! !    wwu~~, ""#A!ggn6fgg$ $    CGG,<b$A$A B BB ""#B!ggn6kll$ $    "  r&   	flat_datac                   78K   	 |                      d          |                      d          |                      dg           |                      dg           |                      dg           d}t          j        |d          d d	         }t                              d
|          7|                      dg           |                      dg           t          t          d |                      dg           D                                 d}t          j        |d          d d         }t                              d
|          8dd l}|	                    |
                                                    d 7fd          |
                                                    d 8fd                     d {V \  }}t          j        |j        d         j        j                  }t          j        |j        d         j        j                  }	|                     dg           }
|	                     dg           }|	                     dg           }d |                      dg           D             }t!          d |D             d          }i }|                      dg           D ]}t#          |                     dd                                                                                    }|ra|                     dd          }|                     dd          }|                     dd          }| d| d|                                 ||<   |
D ]t}t#          |                     dd                                                                                    }||v r||         |d <   |                     d!          d"v r||d!<   u|                      dg           }t!          d# |                      dg           D             d$          }|                      dg           }t!          d% |                      dg           D             d$          }g }t)          |          D ]T\  }}|                     d&d          }|                     d'd          }|                     dd          }|s|r| d| d|                                 nt#          |          }|                     d(d           d|                                 }|                     d)          d*k    }|rd+n|                     d)          d,k    rd-nd.} |                    d/t#          |d0z                                 d1           |                     d2d3          |||rd-nd.d4|                     d!          p||rd5nd d6d7	           Vt!          d8 |                      dg           D             d9          }!|                      dg           }"t!          d: |"D             d           }#t!          d; |"D             d<          }$|#rt#          |#                     d=d                    }%dd l}&|&                    d>|%|&j                  }'|'rd?|'                    d0           d@ndA}(|                    dBdC|#                     dDdE           dF|(d-d4|$pd<dGdHd7	           t          t          dI |                      dg           D                                 })t          t          dJ |                      dg           D                                 }*g }+t)          |)          D ]c\  }},|,|*v }-|+                    dKt#          |d0z                                 dL           dM|, dNdO|-r|,ndP|-rd.nd-dQ|!pd9|-rd n|, dRdSd7	           dg }.d0}/dT|dUdVd.dQdWdX|pd$dUdVd.dYdWg}0|                      d          r|0                    dZ|!pd9dUdVd.dYdW           |"r&|0                    d[|$pd<d\|#r|(nd]|#rd-nd.d4dW           |                      d          r|0                    d^d_dUdVd.d`dW           |                      dai                                db          s=|                      dai                                dci                                dd          r|0                    dedfdUdVd.dYdW           |0D ]{}1|.                    dgt#          |/                              dL           |1dh         |1di         |1dj         |1d)         |1dk         |1dl         |1d)         d-k    rdmnd dnd7	           |/d0z  }/||
|z   |z   |+z   |.z   }2do |2D             |d<   dp |2D             |d6<   dq |2D             |dH<   dr |2D             |dS<   ds |2D             |dn<   ddddddt}3|2D ],}|                     dud          }4|4|3v r|3|4xx         d0z  cc<   -i d|                     d          d|                     d          dvdw|                     ddx           dydzt7          |2           d{d|t7          |2          d}t7          |2          d|2d|                     dg           d6|                     d6g           dH|                     dHg           dS|                     dSg           dn|                     dng           d~d|3d         id|3d6         id|3dH         id|3dS         id|3dn         idtd|                     dd          d|                     dd          d|                     di           dt9          |2          t;          |2          d|3d         |3d6         |3dH         |3dS         |3dn         gdt=          d |2D                       t=          d |2D                       t=          d |2D                       t=          d |2D                       t=          d |2D                       t=          d |2D                       ddd}5|5S # t>          $ rL}6dt#          |6          g ddiddiddiddiddidtdddddddddddd	g g g g ddg ddddddddcY d }6~6S d }6~6ww xY w)Nbatch_idproduct_name
parameters
sop_limitslims_results)r5   r6   r7   r8   r9      )indenti'  z<data>equipment_readingsmaintenance_recordsc              3   l   K   | ]/}|                     d           |                     d d          V  0dS source_filer   Nr   .0ps     r$   	<genexpr>z&validate_extraction.<locals>.<genexpr>   sV       % %-.55''%mR((% % % % % %r&   )r<   r=   source_filesi@  r   c                  j    t           j        j                            dddddd dgddid	
          S )Ngpt-4oi  systemIYou are a pharma data validation engine. Return JSON only. No extra text.rolecontentuserr   json_objectr   model
max_tokensmessagesresponse_formattemperatureclientchatcompletionscreate)prompt1s   r$   <lambda>z%validate_extraction.<locals>.<lambda>   T    6;CZCaCa%2}~~#88 "( 7 Db 	D 	D r&   c                  j    t           j        j                            dddddd dgddid	
          S )NrH   i  rI   rJ   rK   rN   r   rO   r   rP   rV   )prompt2s   r$   r\   z%validate_extraction.<locals>.<lambda>   r]   r&   validation_rowsequipment_rowsoperator_rowsc                 :    g | ]}|                     d d          S )filenamer   rA   rC   fs     r$   
<listcomp>z'validate_extraction.<locals>.<listcomp>   s&    ]]]aeeJ33]]]r&   c              3   ^   K   | ](}d t          |          v sdt          |          v $|V  )dS )BatchBMRN)r   re   s     r$   rE   z&validate_extraction.<locals>.<genexpr>   sG      cc1gQ>OcSX\_`a\b\bSbcQccccccr&   Batch_Record_BTC0048r   r   lower_limitupper_limitunit- r,   r@   )r7   Nr   c              3   l   K   | ]/}|                     d           |                     d d          V  0dS )rd   LIMS_Results_BTC0048.csvNrA   re   s     r$   rE   z&validate_extraction.<locals>.<genexpr>  sF      {{qijininoyiziz{QUU:9::{{{{{{r&   rr   c              3      K   | ]<}|                     d           t          |                     d d                    V  =dS r?   r   r   )rC   es     r$   rE   z&validate_extraction.<locals>.<genexpr>  sM      nnqYZY^Y^_lYmYmnS}b))**nnnnnnr&   specification_lowspecification_highresult_valuer"   Failr(   Reviewr   ValidzLIMS-      	test_namezUnknown Testd   u$   OOS — Result outside specificationspecifications)	r   r   r,   r)   r   
confidencer@   r   r   c              3      K   | ]<}|                     d           t          |                     d d                    V  =dS r?   rt   rC   eqs     r$   rE   z&validate_extraction.<locals>.<genexpr>1  sM      wwacagaghuavavwSr**++wwwwwwr&   zEquipment_Logs_EQP_GRAN_01.csvc              3      K   | ]t}d t          |                    dd                                                    v s7d t          |                    dd                                                    v p|V  udS )OVERDUEr"   r   observationN)r   r   upperrC   ms     r$   rE   z&validate_extraction.<locals>.<genexpr>7  s       A A1yChPR@S@S<T<T<Z<Z<\<\/\ A#aeeM26677==???AQ A A A A A Ar&   c              3      K   | ]<}|                     d           t          |                     d d                    V  =dS r?   rt   r   s     r$   rE   z&validate_extraction.<locals>.<genexpr><  sJ      ``q155Q^K_K_`S}b))**``````r&   zMaintenance_Log_EQP_GRAN_01.csvr   z(\d+)\s*days?\s*past\s*dueu   OVERDUE — z days past duer   zREF-CAL-001u   Calibration Status — equipment_idEQP_GRAN_01u   Current (≤6 months)u>   Calibration overdue — equipment may give inaccurate readings	equipmentc              3   j   K   | ].}|                     d           |                     d           V  /dS operator_idNrA   r   s     r$   rE   z&validate_extraction.<locals>.<genexpr>R  sT        
  
&(vvm$$ 
FF=!! 
  
  
  
  
  
r&   c              3   j   K   | ].}|                     d           |                     d           V  /dS r   rA   rB   s     r$   rE   z&validate_extraction.<locals>.<genexpr>W  sT       #
 #
%&uu]###
EE-  #
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r&   zOP-   zOperator ID z in Equipment LogzPresent in BMRzMissing from BMR rowsb   z4 found in Equipment Log but not recorded in BMR rowsr-   zBatch Record BTC0048PresentVerified)namerd   targetfoundr"   r   zLIMS Results BTC0048c   zEquipment Log EQP_GRAN_01zMaintenance Log EQP_GRAN_01zCalibration CurrentCurrentzSOP Process GranulationzSOP_Process_Granulation.pdf_   deviation_detailsdeviation_iddeviation_recordDeviation_IDzDeviation Report DEV-2024-0312zDeviation_DEV20240312.jsonzDOC-r   r   r   r   rd   zCalibration overduesource_documentsc                 D    g | ]}|                     d           dk    |S )r   r7   rA   rC   rs     r$   rg   z'validate_extraction.<locals>.<listcomp>  s,     U U Uqe8T U U U Ur&   c                 D    g | ]}|                     d           dk    |S )r   r   rA   r   s     r$   rg   z'validate_extraction.<locals>.<listcomp>  s-    $]$]$]1AEE%LLL\<\$]Q$]$]$]r&   c                 D    g | ]}|                     d           dk    |S )r   r   rA   r   s     r$   rg   z'validate_extraction.<locals>.<listcomp>  ,    SSSaquuU||{7RSSSSr&   c                 D    g | ]}|                     d           dk    |S )r   r-   rA   r   s     r$   rg   z'validate_extraction.<locals>.<listcomp>  r   r&   c                 D    g | ]}|                     d           dk    |S )r   r   rA   r   s     r$   rg   z'validate_extraction.<locals>.<listcomp>  s-    &a&a&aQaeeEllN`>`&aq&a&a&ar&   )r7   r   r   r-   r   r   batch_validation_titlezBatch Validation: zN/Ar*   z.Integrity check for automated extraction from z lab reports.total_parameterstotal_validation_entriestabscountcompliance_scorecompliance_labelalcoa_checklistmissing_data_alertszConfidence Heatmap)labeldatac              3   L   K   | ]}|                     d           dk    dV   dS )r   r{   r|   NrA   r   s     r$   rE   z&validate_extraction.<locals>.<genexpr>  s:      "`"`!%%@S:T:TX_:_"`1"`"`"`"`"`"`r&   c              3   L   K   | ]}|                     d           dk    dV   dS )r   r(   r|   NrA   r   s     r$   rE   z&validate_extraction.<locals>.<genexpr>  s:      &h&hQaeeDW>X>X\g>g&hq&h&h&h&h&h&hr&   c              3   L   K   | ]}|                     d           dk    dV   dS )r   r   r|   NrA   r   s     r$   rE   z&validate_extraction.<locals>.<genexpr>  s:      )n)nGZA[A[_mAm)n!)n)n)n)n)n)nr&   c              3   L   K   | ]}|                     d           dk    dV   dS )r   r   r|   NrA   r   s     r$   rE   z&validate_extraction.<locals>.<genexpr>  s:      $j$j1AEEBU<V<VZi<i$jQ$j$j$j$j$j$jr&   c              3   L   K   | ]}|                     d           dk    dV   dS )r   zUnmapped Parameterr|   NrA   r   s     r$   rE   z&validate_extraction.<locals>.<genexpr>  s:      %p%pAQUUCV=W=W[o=o%pa%p%p%p%p%p%pr&   c              3   N   K   | ] }|                     d d          dk     dV  !dS )r   r   K   r|   NrA   r   s     r$   rE   z&validate_extraction.<locals>.<genexpr>  s<      +a+a!155WZC[C[^`C`+aA+a+a+a+a+a+ar&   )valid_countdeviation_countneeds_review_countmissing_countunmapped_countlow_confidence_count	validated)ai_mapping_insightsconfidence_heatmapsummaryr"   errorErrorfail)	attributablelegiblecontemporaneousoriginalaccuratecomplete
consistentenduring	availabler.   )r   r   r   r   r   )r"   r   r`   r   r   r   r   r   r   r   r   ) r   jsondumpsPROMPT_PART1replacelistsetPROMPT_PART2asynciogatherget_event_looprun_in_executorloadschoicesr   rM   nextr   lowerstrip	enumerater   zfillresearch
IGNORECASEgrouplenr%   r2   sum	Exception)9r3   
part1_data	part1_str
part2_data	part2_strr   	response1	response2result1result2
param_rows
equip_rowsop_rowsuploaded_filenamesbmr_filenamesop_mapspnamelohirn   r!   limslims_filenameall_files_flatlims_file_real	spec_rowsilrtgtfvalis_failr"   equip_filenamer=   overdue_recordmaint_filenameobsr   
days_matchdays_streq_operatorsparam_operatorsop_rows_pythonopin_bmrsrc_rows_pythondoc_counter
files_infofir	   
tab_countstresultru   r[   r_   s9                                                          @@r$   validate_extractionr     sW     [
 "j11%MM.99#--b99#--b99%MM."==
 

 Jz!444VeV<	&&x;; #,--0Db"I"I#,==1F#K#K  % %2;--b2Q2Q% % % " "  
 

 Jz!444UdU;	&&x;; 	%,^^""$$44T 	< 	< 	< 	< 	 	 ""$$44T 	< 	< 	< 	< 	 	&
 &
  
  
  
  
  
  
	9. *Y.q19ABB*Y.q19ABB [[!2B77
[[!1266
++or22 ^]Y]]<Y[=\=\]]]cc(:ccce{|||R00 	= 	=A.3344::<<BBDDE =UU="--UU="--uuVR(($&!4!4!4!4d!4!4!:!:!<!< 	2 	2C 0"5566<<>>DDFFE 5&-enN#ww}%%)AA 2%1M" }}^R00{{IMMR`bdDeDe{{{&
 

 #|R88nnIMM.RT4U4Unnn&
 

 	t__ 	 	EAr+R00B,b11B66&"%%D13HrHR%%"%%t%%++---s4yyCff^R0099499??AADffX&&&0G$+l[[266(CSCSW_C_1lelF8S1XX^^A%6%688"$&&n"E"E ##7>%K^^G!!vvm44FJQ [ F FW['
 
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 wwimmDXZ\6]6]www,
 
 (mm,A2FFA A+ A A A
 

 ``4G```-
 
  	n((;;<<CIII#@#r}UUJMWfIj&6&6q&9&9IIII]fH*"oN<N<N~_l<m<m"o"o 7'%3!-R1R `"
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 C  
  
,5MM:NPR,S,S 
  
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 
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 s #
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  
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  
 |,, 	 	EAr?*F!!63qs88>>!#4#466"F"F"F"F 0%+Hrr1H06%JWWN -Q1Q(. or4o4o4o"
# 
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 
 /(##!   0*H.H##!  

( ==-.. 	4*N.N##!       	5*O.O/%3B,:G..!     ==&& 	19##!      ==,b1155nEE 	T]TaTabuwyTzTzT~T~  @R  TV  UW  UW  U[  U[  \j  Uk  Uk 	88##!       	 	B""?C$4$4$:$:1$=$=??"$V* "8!'{%'\ .!*~9;H9W a 5 5]a)
$ 
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 1KK	)J6G/Y !V UH U U U$]$]$]$]$] !SS8SSSSS8SSS&a&a(&a&a&a"# %&YZpqrr
 	# 	#C|,,AJ #1",
J//,
GKK77,
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 ["55,
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 ,> C C,
 %,j.F$G%,j9I.J$K%,j.E$F%,j.E$F%,j9K.L$M ,
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* ,> C C+,
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0 $38#<#<-|,/0{+{+12	# 	#  #"`"`h"`"`"```#&&h&h(&h&h&h#h#h&))n)nX)n)n)n&n&n!$$j$j$j$j$j!j!j"%%p%p%p%p%p"p"p(++a+ax+a+a+a(a(a  "W,
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